[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 538 items for (author: das & p)

EMDB-34548:
Spike 3-up RBD with THSC20.HVTR04 (Fab4): State - III
Method: single particle / : Rencilin CF, Ansari MY, Chatterjee A, Deshpande S, Mukherjee S, Singh R, Jayatheertha S, Reddy PM, Das P, Hingankar N, Rathore D, Varadarajan R, Bhattacharya J, Dutta S

EMDB-34563:
Spike 2-up RBD with THSC20.HVTR26 (Fab26): State - I
Method: single particle / : Rencilin CF, Ansari MY, Chatterjee A, Deshpande S, Mukherjee S, Singh R, Jayatheertha S, Reddy PM, Das P, Hingankar N, Rathore D, Varadarajan R, Bhattacharya J, Dutta S

EMDB-34602:
State - I: Spike 2-up RBD with THSC20.HVTR26 (Fab26)
Method: single particle / : Rencilin CF, Ansari MY, Chatterjee A, Deshpande S, Mukherjee S, Singh R, Jayatheertha S, Reddy PM, Das P, Hingankar N, Rathore D, Varadarajan R, Bhattacharya J, Dutta S

EMDB-34603:
State - II: Spike 3-up RBD with THSC20.HVTR26 (Fab26)
Method: single particle / : Rencilin CF, Ansari MY, Chatterjee A, Deshpande S, Mukherjee S, Singh R, Jayatheertha S, Reddy PM, Das P, Hingankar N, Rathore D, Varadarajan R, Bhattacharya J, Dutta S

EMDB-34546:
State - I: Spike 2-up RBD with THSC20.HVTR04 (Fab4)
Method: single particle / : Rencilin CF, Ansari MY, Chatterjee A, Deshpande S, Mukherjee S, Singh R, Jayatheertha S, Reddy PM, Das P, Hingankar N, Rathore D, Varadarajan R, Bhattacharya J, Dutta S

EMDB-34547:
Spike 3-up RBD with THSC20.HVTR04 (Fab4): State - II
Method: single particle / : Rencilin CF, Ansari MY, Chatterjee A, Deshpande S, Mukherjee S, Singh R, Jayatheertha S, Reddy PM, Das P, Hingankar N, Rathore D, Varadarajan R, Bhattacharya J, Dutta S

EMDB-43889:
Chlamydomonas reinhardtii mastigoneme (constituent map 1)
Method: single particle / : Dai J, Ma M, Zhang R, Brown A

EMDB-43890:
Chlamydomonas reinhardtii mastigoneme (constituent map 2)
Method: single particle / : Dai J, Ma M, Zhang R, Brown A

EMDB-43891:
Chlamydomonas reinhardtii mastigoneme (constituent map 3)
Method: single particle / : Dai J, Ma M, Zhang R, Brown A

EMDB-43892:
Composite cryo-EM map of the Chlamydomonas reinhardtii mastigoneme
Method: single particle / : Dai J, Ma M, Zhang R, Brown A

PDB-9b4h:
Chlamydomonas reinhardtii mastigoneme filament
Method: single particle / : Dai J, Ma M, Zhang R, Brown A

EMDB-17329:
48S late-stage initiation complex with m6A mRNA
Method: single particle / : Guca E, Lima LHF, Boissier F, Hashem Y

EMDB-17330:
48S late-stage initiation complex with non methylated mRNA
Method: single particle / : Guca E, Lima LHF, Boissier F, Hashem Y

PDB-8p03:
48S late-stage initiation complex with m6A mRNA
Method: single particle / : Guca E, Lima LHF, Boissier F, Hashem Y

PDB-8p09:
48S late-stage initiation complex with non methylated mRNA
Method: single particle / : Guca E, Lima LHF, Boissier F, Hashem Y

EMDB-18807:
SD1-2 fab in complex with SARS-COV-2 BA.12.1 Spike Glycoprotein.
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-18808:
SD1-3 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

PDB-8r1c:
SD1-2 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

PDB-8r1d:
SD1-3 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-16680:
BA.4/5-5 FAB IN COMPLEX WITH SARS-COV-2 BA.4 SPIKE GLYCOPROTEIN
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI, Fry EE

PDB-8cin:
BA.4/5-5 FAB IN COMPLEX WITH SARS-COV-2 BA.4 SPIKE GLYCOPROTEIN
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI, Fry EE

EMDB-17993:
Atomic structure and conformational variability of the HER2-Trastuzumab-Pertuzumab complex
Method: single particle / : Ruedas R, Vuillemot R, Tubiana T, Winter JM, Pieri L, Arteni AA, Samson C, Jonic J, Mathieu M, Bressanelli S

PDB-8pwh:
Atomic structure and conformational variability of the HER2-Trastuzumab-Pertuzumab complex
Method: single particle / : Ruedas R, Vuillemot R, Tubiana T, Winter JM, Pieri L, Arteni AA, Samson C, Jonic J, Mathieu M, Bressanelli S

EMDB-15411:
Single particle structure of Atg18-WT
Method: single particle / : Mann D, Fromm S, Martinez-Sanchez A, Gopaldass N, Mayer A, Sachse C

PDB-8afx:
Single particle structure of Atg18-WT
Method: single particle / : Mann D, Fromm S, Martinez-Sanchez A, Gopaldass N, Mayer A, Sachse C

PDB-8pvv:
Archaeoglobus fulgidus AfAgo complex with AfAgo-N protein (fAfAgo) bound with 30 nt RNA guide and 51 nt DNA target
Method: single particle / : Manakova EN, Zaremba M, Pocevicuite R, Golovinas E, Sasnauskas G, Zagorskaite E, Silanskas A

PDB-8qg0:
Archaeoglobus fulgidus AfAgo complex with AfAgo-N protein (fAfAgo) bound with 17 nt RNA guide and 17 nt DNA target
Method: single particle / : Manakova EN, Zaremba M, Pocevicuite R, Golovinas E, Zagorskaite E, Silanskas A

EMDB-18043:
Helical structure of the influenza A virus ribonucleoprotein-like
Method: helical / : Chenavier F, Estrozi LF, Zarkadas E, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T

EMDB-18044:
Focused reconstruction of influenza A RNP-like particle
Method: helical / : Chenavier F, Estrozi LF, Zarkadas E, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T

PDB-8pzp:
Model for influenza A virus helical ribonucleoprotein-like structure
Method: helical / : Chenavier F, Estrozi LF, Zarkadas E, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T

PDB-8pzq:
Model for focused reconstruction of influenza A RNP-like particle
Method: helical / : Chenavier F, Estrozi LF, Zarkadas E, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T

EMDB-17973:
Archaeoglobus fulgidus AfAgo complex with AfAgo-N protein (fAfAgo) bound with 30 nt RNA guide and 51 nt DNA target
Method: single particle / : Manakova EN, Zaremba M, Pocevicuite R, Golovinas E, Sasnauskas G, Zagorskaite E, Silanskas A

EMDB-18386:
Archaeoglobus fulgidus AfAgo complex with AfAgo-N protein (fAfAgo) bound with 17 nt RNA guide and 17 nt DNA target
Method: single particle / : Manakova EN, Zaremba M, Pocevicuite R, Golovinas E, Zagorskaite E, Silanskas A

EMDB-15408:
Tube assembly of Atg18-PR72AA
Method: helical / : Mann D, Fromm S, Martinez-Sanchez A, Gopaldass N, Mayer A, Sachse C

EMDB-15410:
Tube assembly of Atg18-WT
Method: helical / : Mann D, Fromm S, Martinez-Sanchez A, Gopaldass N, Mayer A, Sachse C

EMDB-15412:
Subtomogram average of membrane-bound Atg18 oligomers
Method: subtomogram averaging / : Mann D, Fromm S, Martinez-Sanchez A, Gopaldass N, Mayer A, Sachse C

PDB-8afq:
Tube assembly of Atg18-PR72AA
Method: helical / : Mann D, Fromm S, Martinez-Sanchez A, Gopaldass N, Mayer A, Sachse C

PDB-8afw:
Tube assembly of Atg18-WT
Method: helical / : Mann D, Fromm S, Martinez-Sanchez A, Gopaldass N, Mayer A, Sachse C

PDB-8afy:
Subtomogram average of membrane-bound Atg18 oligomers
Method: subtomogram averaging / : Mann D, Fromm S, Martinez-Sanchez A, Gopaldass N, Mayer A, Sachse C

EMDB-34534:
Un-sharpened map of phycobilisome from Porphyridium purpureum under Middle light
Method: single particle / : Ma JF, Sui SF

EMDB-16372:
Structure of the peroxisomal Pex1/Pex6 ATPase complex bound to a substrate in single seam state
Method: single particle / : Ruettermann M, Koci M, Lill P, Geladas ED, Kaschani F, Klink BU, Erdmann R, Gatsogiannis C

EMDB-16373:
Structure of the peroxisomal Pex1/Pex6 ATPase complex bound to a substrate in twin seam state
Method: single particle / : Ruettermann M, Koci M, Lill P, Geladas ED, Kaschani F, Klink BU, Erdmann R, Gatsogiannis C

PDB-8c0v:
Structure of the peroxisomal Pex1/Pex6 ATPase complex bound to a substrate in single seam state
Method: single particle / : Ruettermann M, Koci M, Lill P, Geladas ED, Kaschani F, Klink BU, Erdmann R, Gatsogiannis C

PDB-8c0w:
Structure of the peroxisomal Pex1/Pex6 ATPase complex bound to a substrate in twin seam state
Method: single particle / : Ruettermann M, Koci M, Lill P, Geladas ED, Kaschani F, Klink BU, Erdmann R, Gatsogiannis C

EMDB-18188:
Atomic structure and conformational variability of the HER2-Trastuzumab-Pertuzumab complex
Method: single particle / : Ruedas R, Vuillemot R, Tubiana T, Winter JM, Pieri L, Arteni AA, Samson C, Jonic J, Mathieu M, Bressanelli S

PDB-8q6j:
Atomic structure and conformational variability of the HER2-Trastuzumab-Pertuzumab complex
Method: single particle / : Ruedas R, Vuillemot R, Tubiana T, Winter JM, Pieri L, Arteni AA, Samson C, Jonic J, Mathieu M, Bressanelli S

EMDB-17369:
A CHIMERA construct containing human SARM1 ARM and SAM domains and C. elegans TIR domain.
Method: single particle / : Isupov MN, Opatowsky Y

EMDB-17370:
C. elegans TIR-1 protein.
Method: single particle / : Isupov MN, Opatowsky Y

PDB-8p2l:
A CHIMERA construct containing human SARM1 ARM and SAM domains and C. elegans TIR domain.
Method: single particle / : Isupov MN, Opatowsky Y

PDB-8p2m:
C. elegans TIR-1 protein.
Method: single particle / : Isupov MN, Opatowsky Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more